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zymoclean large fragment dna recovery kit  (Zymo Research)


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    Structured Review

    Zymo Research zymoclean large fragment dna recovery kit
    Zymoclean Large Fragment Dna Recovery Kit, supplied by Zymo Research, used in various techniques. Bioz Stars score: 95/100, based on 201 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/large+fragment+dna+recovery+kit/Zymoclean+Large+Fragment+DNA+Recovery/bio_rxiv__64898__2026__02__24__707731-185-22-28
    Average 95 stars, based on 201 article reviews
    zymoclean large fragment dna recovery kit - by Bioz Stars, 2026-09
    95/100 stars

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    Purification:

    Article Title: Reference genome of the bicolored carpenter ant, Camponotus vicinus
    Article Snippet: DNA was further cleaned with Zymo gDNA clean and concentrator kit (Zymo Research, Irvine, CA; Cat # 4033). .. To retain large DNA fragments, columns from large fragment DNA recovery kit (Zymo Research, Cat # D4045) were used during purification. .. Purity of gDNA was accessed using NanoDrop ND-1000 spectrophotometer where 260/280 ratio of 1.8 and 260/230 ratio of 2.26 was observed.

    Article Title: Radical-Mediated Nucleophilic Peptide Cross-Linking in Dynobactin Biosynthesis
    Article Snippet: Reaction mix: 34.5 μ L water, 2.5 μ L DMSO, 10 μ L 5× Q5 Reaction Buffer, 200 μ M (final concentration) dNTPs, 0.5 μ M Dyn_Forward and Dyn_Reverse primers ( Table S1 ), 1 μ g template DNA, and 0.02 U/ μ L Q5 DNA polymerase (New England Biolabs, Ipswich, USA). .. PCR products were purified using an agarose gel electrophoresis and the Large Fragment DNA Recovery Kit (Zymo Research, Irvine, USA). ..

    Article Title: Radical-Mediated Nucleophilic Peptide Cross-Linking in Dynobactin Biosynthesis.
    Article Snippet: Dynobactins are recently discovered ribosomally synthesized and post-translationally modified peptide (RiPP) antibiotics that selectively kill Gram-negative pathogens by inhibiting the β-barrel assembly machinery (Bam) located on their outer membranes.. Such activity of dynobactins derives from their unique cross-links between Trp1-Asn4 and His6-Tyr8.. In particular, the His6-Tyr8 cross-link is formed between Nτ of His6 and Cβ of Tyr8, an unprecedented type of cross-link in RiPP natural products.

    Article Title: Reference genome of the bicolored carpenter ant, Camponotus vicinus.
    Article Snippet: DNA was further cleaned with Zymo gDNA clean and concentrator kit (Zymo Research, Irvine, CA; Cat # 4033). .. To retain large DNA fragments, columns from large fragment DNA recovery kit (Zymo Research, Cat # D4045) were used during purification. .. Purity of gDNA was accessed using NanoDrop ND-1000 spectrophotometer where 260/280 ratio of 1.8 and 260/230 ratio of 2.26 was observed.

    Article Title: Context-dependent neocentromere activity in synthetic yeast chromosome VIII
    Article Snippet: DNA sticky ends were filled with biotin-14-dCTP (Invitrogen, 19518018) by Klenow enzyme (NEB, M0210L) at 37°C for 80 min. Biotinylated DNA was ligated with 60 U T4 DNA ligase (Thermo Scientific, EL0014) in 1.2 mL final volume at room temperature for 2 h in mild agitation. .. Ligation product was reverse cross-linked by 0.5 mg/mL proteinase K (Thermo Scientific, EO0491) in 0.5% SDS, 25 mM EDTA buffer at 65°C for 4 h. The reverse cross linked sample was ethanol precipitated and purified using the large fragment DNA recovery kit (Zymo Research, D4046). .. Religated-biotinylated restriction fragments were pulled down using Dynabeads MyOne Streptavidin C1 magnetic beads (Invitrogen 65001) according to the manufacture protocol.

    Article Title: Reference genome of the bicolored carpenter ant, Camponotus vicinus
    Article Snippet: DNA was further cleaned with Zymo gDNA clean and concentrator kit (Zymo Research, Irvine, CA; Cat # 4033). .. To retain large DNA fragments, columns from large fragment DNA recovery kit (Zymo Research, Cat # D4045) were used during purification. .. Purity of gDNA was accessed using NanoDrop ND-1000 spectrophotometer where 260/280 ratio of 1.8 and 260/230 ratio of 2.26 was observed.

    Article Title: Manipulating the 3D organization of the largest synthetic yeast chromosome.
    Article Snippet: Ligation product was reverse cross-linked by 0.5 mg/mL proteinase K (Thermo Scientific, EO0492) in 25 mM EDTA buffer at 65 C for 4 hours. .. The reverse crosslinked sample was purified using the large fragment DNA recovery kit (Zymo Research, D4046). .. Purified Hi-C library was used as input material for Illumina sequencing library prep kit (NEB, E7805).

    Polymerase Chain Reaction:

    Article Title: Radical-Mediated Nucleophilic Peptide Cross-Linking in Dynobactin Biosynthesis
    Article Snippet: Reaction mix: 34.5 μ L water, 2.5 μ L DMSO, 10 μ L 5× Q5 Reaction Buffer, 200 μ M (final concentration) dNTPs, 0.5 μ M Dyn_Forward and Dyn_Reverse primers ( Table S1 ), 1 μ g template DNA, and 0.02 U/ μ L Q5 DNA polymerase (New England Biolabs, Ipswich, USA). .. PCR products were purified using an agarose gel electrophoresis and the Large Fragment DNA Recovery Kit (Zymo Research, Irvine, USA). ..

    Article Title: Radical-Mediated Nucleophilic Peptide Cross-Linking in Dynobactin Biosynthesis.
    Article Snippet: Dynobactins are recently discovered ribosomally synthesized and post-translationally modified peptide (RiPP) antibiotics that selectively kill Gram-negative pathogens by inhibiting the β-barrel assembly machinery (Bam) located on their outer membranes.. Such activity of dynobactins derives from their unique cross-links between Trp1-Asn4 and His6-Tyr8.. In particular, the His6-Tyr8 cross-link is formed between Nτ of His6 and Cβ of Tyr8, an unprecedented type of cross-link in RiPP natural products.

    Agarose Gel Electrophoresis:

    Article Title: Radical-Mediated Nucleophilic Peptide Cross-Linking in Dynobactin Biosynthesis
    Article Snippet: Reaction mix: 34.5 μ L water, 2.5 μ L DMSO, 10 μ L 5× Q5 Reaction Buffer, 200 μ M (final concentration) dNTPs, 0.5 μ M Dyn_Forward and Dyn_Reverse primers ( Table S1 ), 1 μ g template DNA, and 0.02 U/ μ L Q5 DNA polymerase (New England Biolabs, Ipswich, USA). .. PCR products were purified using an agarose gel electrophoresis and the Large Fragment DNA Recovery Kit (Zymo Research, Irvine, USA). ..

    Article Title: Radical-Mediated Nucleophilic Peptide Cross-Linking in Dynobactin Biosynthesis.
    Article Snippet: Dynobactins are recently discovered ribosomally synthesized and post-translationally modified peptide (RiPP) antibiotics that selectively kill Gram-negative pathogens by inhibiting the β-barrel assembly machinery (Bam) located on their outer membranes.. Such activity of dynobactins derives from their unique cross-links between Trp1-Asn4 and His6-Tyr8.. In particular, the His6-Tyr8 cross-link is formed between Nτ of His6 and Cβ of Tyr8, an unprecedented type of cross-link in RiPP natural products.

    Ligation:

    Article Title: Context-dependent neocentromere activity in synthetic yeast chromosome VIII
    Article Snippet: DNA sticky ends were filled with biotin-14-dCTP (Invitrogen, 19518018) by Klenow enzyme (NEB, M0210L) at 37°C for 80 min. Biotinylated DNA was ligated with 60 U T4 DNA ligase (Thermo Scientific, EL0014) in 1.2 mL final volume at room temperature for 2 h in mild agitation. .. Ligation product was reverse cross-linked by 0.5 mg/mL proteinase K (Thermo Scientific, EO0491) in 0.5% SDS, 25 mM EDTA buffer at 65°C for 4 h. The reverse cross linked sample was ethanol precipitated and purified using the large fragment DNA recovery kit (Zymo Research, D4046). .. Religated-biotinylated restriction fragments were pulled down using Dynabeads MyOne Streptavidin C1 magnetic beads (Invitrogen 65001) according to the manufacture protocol.



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    Zymo Research zymoclean large fragment dna recovery kit
    Zymoclean Large Fragment Dna Recovery Kit, supplied by Zymo Research, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/large+fragment+dna+recovery+kit/Zymoclean+Large+Fragment+DNA+Recovery/bio_rxiv__64898__2026__02__24__707731-185-22-28
    Average 95 stars, based on 1 article reviews
    zymoclean large fragment dna recovery kit - by Bioz Stars, 2026-09
    95/100 stars
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